Grey White Mask

Return to index

Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

2D to 3D
Anatomist Show Grey White on T1 MRI
Cortex Topological Correction
Cortical Folds Graph
Grey White Classification
Hemi Surfaces and Sulci Extraction
Hemisphere Cortical Folds Graph
Hemisphere Grey White Topological Correction
Hemisphere Pial Mesh
Hemisphere Sulci Skeleton
Hemisphere Sulci Thickness and Volumes
Import MNI CIVET Segmentation
Pial Mesh
Prepare For Morphologist
Sulci recognition with Deep CNN
Sulci Skeleton
Surfaces and Sulci Extraction
{Viewer} Grey White Mask

Associated formats

Aperio svs
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIS image
gz compressed ECAT i image
gz compressed ECAT v image
gz compressed GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
gz compressed SPM image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
Z compressed ECAT i image
Z compressed ECAT v image
Z compressed GIS image
Z compressed SPM image
Zeiss czi

Associated ontology rules

  • brainvisa-3.2.0 :
    • {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/segmentation/left/grey_white_<side>_<subject>
    {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/segmentation/right/grey_white_<side>_<subject>

    Key attributes

  • brainvisa-3.0 :
    • protocol ,  subject ,  filename_variable ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis ,  side
  • brainvisa-3.2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  center ,  subject ,  acquisition ,  analysis ,  side ,  mapped ,  contrast
  • morphologist-bids-1.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  acquisition ,  analysis
  • morphologist-bids-2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  bids ,  analysis